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1

The complex geography of domestication of the African rice Oryza glaberrima

Choi, Jae Young, Zaidem, Maricris, Gutaker, Rafal, Dorph, Katherine, Singh, Rakesh Kumar, Purugganan, Michael D., Ross-Ibarra, Jeffrey

Journal:

Year:

2019

Language:

english

File:

PDF, 5.71 MB

english, 2019

2

Identification of a functional transposon insertion in the maize domestication gene tb1

Studer, Anthony, Zhao, Qiong, Ross-Ibarra, Jeffrey, Doebley, John

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 790 KB

english, 2011

3

The interplay of demography and selection during maize domestication and expansion

Wang, Li, Beissinger, Timothy M., Lorant, Anne, Ross-Ibarra, Claudia, Ross-Ibarra, Jeffrey, Hufford, Matthew B.

Journal:

Year:

2017

Language:

english

File:

PDF, 937 KB

english, 2017

4

The genetic architecture of the maize progenitor, teosinte, and how it was altered during maize domestication

Chen, Qiuyue, Samayoa, Luis Fernando, Yang, Chin Jian, Bradbury, Peter J., Olukolu, Bode A., Neumeyer, Michael A., Romay, Maria Cinta, Sun, Qi, Lorant, Anne, Buckler, Edward S., Ross-Ibarra, Jeffrey,

Journal:

Year:

2020

File:

PDF, 2.96 MB

2020

5

Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America

Swarts, Kelly, Gutaker, Rafal M., Benz, Bruce, Blake, Michael, Bukowski, Robert, Holland, James, Kruse-Peeples, Melissa, Lepak, Nicholas, Prim, Lynda, Romay, M. Cinta, Ross-Ibarra, Jeffrey, Sanchez-Go

Journal:

Year:

2017

Language:

english

File:

PDF, 584 KB

english, 2017

6

How to make a domesticate

Stetter, Markus G., Gates, Daniel J., Mei, Wenbin, Ross-Ibarra, Jeffrey

Journal:

Current Biology

Year:

2017

Language:

english

File:

PDF, 1.02 MB

english, 2017

7

The ethnobotany of Chaya (Cnidoscolus aconitifoliusSSP.Aconitifoliusbreckon): A nutritious Maya Vegetable

Jeffrey Ross-Ibarra, Alvaro Molina-Cruz

Journal:

Economic Botany

Year:

2002

Language:

english

File:

PDF, 1.56 MB

english, 2002

8

Recent demography drives changes in linked selection across the maize genome

Beissinger, Timothy M., Wang, Li, Crosby, Kate, Durvasula, Arun, Hufford, Matthew B., Ross-Ibarra, Jeffrey

Journal:

Year:

2016

Language:

english

File:

PDF, 807 KB

english, 2016

9

Evolutionary insights into plant breeding

Turner-Hissong, Sarah D, Mabry, Makenzie E, Beissinger, Timothy M, Ross-Ibarra, Jeffrey, Pires, J Chris

Journal:

Current Opinion in Plant Biology

Year:

2020

File:

PDF, 497 KB

2020

10

Population genetics and ethnobotany of cultivatedDiospyros riojaeGómez Pompa (Ebenaceae), an endangered fruit crop from Mexico

Provance, Mitchell C., García-Ruiz, Ignacio, Thommes, Casper, Ross-Ibarra, Jeffrey

Journal:

Genetic Resources and Crop Evolution

Year:

2013

Language:

english

File:

PDF, 439 KB

english, 2013

11

Teosinte as a model system for population and ecological genomics

Matthew B. Hufford, Paul Bilinski, Tanja Pyhäjärvi, Jeffrey Ross-Ibarra

Journal:

Trends in Genetics

Year:

2012

Language:

english

File:

PDF, 1.96 MB

english, 2012

12

Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)

Kryvokhyzha, Dmytro, Milesi, Pascal, Duan, Tianlin, Orsucci, Marion, Wright, Stephen I., Glémin, Sylvain, Lascoux, Martin, Ross-Ibarra, Jeffrey

Journal:

Year:

2019

Language:

english

File:

PDF, 6.47 MB

english, 2019

13

Origen y domesticación de la chaya (Cnidoscolus aconitifoliusMill I. M. Johnst): La espinaca Maya

Jeffrey Ross-Ibarra

Journal:

Mexican Studies/Estudios Mexicanos

Year:

2003

File:

PDF, 233 KB

2003

14

Evolutionary Responses to Conditionality in Species Interactions across Environmental Gradients

O’Brien, Anna M., Sawers, Ruairidh J. H., Ross-Ibarra, Jeffrey, Strauss, Sharon Y.

Journal:

American Naturalist

Year:

2018

Language:

english

File:

PDF, 1.47 MB

english, 2018

15

The Temporal Dynamics of Background Selection in Nonequilibrium Populations

Torres, Raul, Stetter, Markus G., Hernandez, Ryan D., Ross-Ibarra, Jeffrey

Journal:

Year:

2020

File:

PDF, 1.70 MB

2020

16

Quantitative trait loci and the study of plant domestication

Jeffrey Ross-Ibarra

Journal:

Year:

2005

Language:

english

File:

PDF, 162 KB

english, 2005

17

Genetic Data Analysis II. Methods for Discrete Population Genentic Data

Ross-Ibarra, Jeffrey

Journal:

Economic Botany

Year:

2002

Language:

english

File:

PDF, 77 KB

english, 2002

18

Selection on Grain Shattering Genes and Rates of Rice Domestication

Lin-Bin Zhang, Qihui Zhu, Zhi-Qiang Wu, Jeffrey Ross-Ibarra, Brandon S. Gaut, Song Ge and Tao Sang

Journal:

New Phytologist

Year:

2009

Language:

english

File:

PDF, 2.27 MB

english, 2009

19

Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima

Stetter, Markus G., Thornton, Kevin, Ross-Ibarra, Jeffrey, Hernandez, Ryan D

Journal:

Year:

2018

Language:

english

File:

PDF, 7.83 MB

english, 2018

20

Crop genomics: advances and applications

Morrell, Peter L., Buckler, Edward S., Ross-Ibarra, Jeffrey

Journal:

Nature Reviews Genetics

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

21

Genetic Data Analysis II. Methods for Discrete Population Genentic Databy B. S. Weir

Review by: Jeffrey Ross-Ibarra

Journal:

Economic Botany

Year:

2002

Language:

english

File:

PDF, 173 KB

english, 2002

22

Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens

Josephs, Emily B., Berg, Jeremy J., Ross-Ibarra, Jeffrey, Coop, Graham

Journal:

Year:

2019

File:

PDF, 719 KB

2019

23

The complex geography of domestication of the African rice Oryza glaberrima

Choi, Jae Young, Zaidem, Maricris, Gutaker, Rafal, Dorph, Katherine, Singh, Rakesh Kumar, Purugganan, Michael D., Ross-Ibarra, Jeffrey

Journal:

Year:

2019

File:

PDF, 5.71 MB

2019

24

Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize

Xue, Wei, Anderson, Sarah N., Wang, Xufeng, Yang, Liyan, Crisp, Peter A., Li, Qing, Noshay, Jaclyn, Albert, Patrice S., Birchler, James A., Bilinski, Paul, Stitzer, Michelle C., Ross-Ibarra, Jeffrey,

Journal:

Year:

2019

File:

PDF, 2.34 MB

2019

25

Selective Loss of Diversity in Doubled-Haploid Lines from European Maize Landraces

Zeitler, Leo, Ross-Ibarra, Jeffrey, Stetter, Markus G.

Journal:

G3 Genes|Genome|Genetics

Year:

2020

File:

PDF, 1.54 MB

2020

26

A ROLE FOR NONADAPTIVE PROCESSES IN PLANT GENOME SIZE EVOLUTION?

Kenneth D. Whitney, Eric J. Baack, James L. Hamrick, Mary Jo W. Godt, Brian C. Barringer, Michael D. Bennett, Christopher G. Eckert, Carol Goodwillie, Susan Kalisz, Ilia J. Leitch, Jeffrey Ross-Ibarra

Journal:

Year:

2010

Language:

english

File:

PDF, 872 KB

english, 2010

27

Influence of cryptic population structure on observed mating patterns in the wild progenitor of maize (Zea mays ssp. parviglumis)

MATTHEW B. HUFFORD, PAUL GEPTS, JEFFREY ROSS-IBARRA

Journal:

Molecular Ecology

Year:

2011

Language:

english

File:

PDF, 402 KB

english, 2011

28

A ROLE FOR NONADAPTIVE PROCESSES IN PLANT GENOME SIZE EVOLUTION?

Kenneth D. Whitney, Eric J. Baack, James L. Hamrick, Mary Jo W. Godt, Brian C. Barringer, Michael D. Bennett, Christopher G. Eckert, Carol Goodwillie, Susan Kalisz, Ilia J. Leitch, Jeffrey Ross-Ibarra

Journal:

Year:

2010

Language:

english

File:

PDF, 2.79 MB

english, 2010

29

Reply to Brush et al.: Wake-up call for crop conservation science

Dyer, George A., López-Feldman, Alejandro, Yúnez-Naude, Antonio, Taylor, J. Edward, Ross-Ibarra, Jeffrey

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 541 KB

english, 2015

30

Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize

Yang, Jinliang, Mezmouk, Sofiane, Baumgarten, Andy, Buckler, Edward S., Guill, Katherine E., McMullen, Michael D., Mumm, Rita H., Ross-Ibarra, Jeffrey, Fay, Justin C.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.17 MB

english, 2017

31

Advances and Limits of Using Population Genetics to Understand Local Adaptation

Tiffin, Peter, Ross-Ibarra, Jeffrey

Journal:

Trends in Ecology & Evolution

Year:

2017

Language:

english

File:

PDF, 433 KB

english, 2017

32

A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize

Dawe, R. Kelly, Lowry, Elizabeth G., Gent, Jonathan I., Stitzer, Michelle C., Swentowsky, Kyle W., Higgins, David M., Ross-Ibarra, Jeffrey, Wallace, Jason G., Kanizay, Lisa B., Alabady, Magdy, Qiu, We

Journal:

Year:

2018

Language:

english

File:

PDF, 5.08 MB

english, 2018

33

Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata

Ross-Ibarra, Jeffrey, Wright, Stephen I., Foxe, John Paul, Kawabe, Akira, DeRose-Wilson, Leah, Gos, Gesseca, Charlesworth, Deborah, Gaut, Brandon S., Fay, Justin C.

Journal:

Year:

2008

Language:

english

File:

PDF, 483 KB

english, 2008

34

On the unfounded enthusiasm for soft selective sweeps II: Examining recent evidence from humans, flies, and viruses

Harris, Rebecca B., Sackman, Andrew, Jensen, Jeffrey D., Ross-Ibarra, Jeffrey

Journal:

Year:

2018

Language:

english

File:

PDF, 2.56 MB

english, 2018

35

Advances and limits of using population genetics to understand local adaptation

Tiffin, Peter, Ross-Ibarra, Jeffrey

Journal:

Trends in Ecology & Evolution

Year:

2014

Language:

english

File:

PDF, 523 KB

english, 2014

36

Diversity and evolution of centromere repeats in the maize genome

Bilinski, Paul, Distor, Kevin, Gutierrez-Lopez, Jose, Mendoza, Gabriela Mendoza, Shi, Jinghua, Dawe, R. Kelly, Ross-Ibarra, Jeffrey

Journal:

Year:

2015

Language:

english

File:

PDF, 757 KB

english, 2015

37

Genetic Architecture of Maize Kernel Composition in the Nested Association Mapping and Inbred Association Panels

Jason P. Cook, Michael D. McMullen, James B. Holland, Feng Tian, Peter Bradbury, Jeffrey Ross-Ibarra, Edward S. Buckler and Sherry A. Flint-Garcia

Journal:

PLANT PHYSIOLOGY

Year:

2012

Language:

english

File:

PDF, 2.44 MB

english, 2012

38

Book reviews

Lytton John Musselman, Kevin D. Janni, Christopher Miller, Margaret M. Mayfield, Wendy Applequist, Norman J. Doorenbos, J. N. Eloff, Isaac S. Bruck, Subodh K. Jain, Jeffrey Ross-Ibarra, Dorothea Bedig

Journal:

Economic Botany

Year:

2002

Language:

english

File:

PDF, 925 KB

english, 2002

39

Widespread Gene Conversion in Centromere Cores

Shi, Jinghua, Wolf, Sarah E., Burke, John M., Presting, Gernot G., Ross-Ibarra, Jeffrey, Dawe, R. Kelly, Malik, Harmit S.

Journal:

Year:

2010

Language:

english

File:

PDF, 1021 KB

english, 2010

40

Implications of Mating Patterns for Conservation of the Endangered Plant Eriogonum ovalifolium var. vineum (Polygonaceae)

Maile C. Neel, Jeffrey Ross-Ibarra and Norman C. Ellstrand

Journal:

American Journal of Botany

Year:

2001

Language:

english

File:

PDF, 2.24 MB

english, 2001

41

Selection on grain shattering genes and rates of rice domestication

Lin-Bin Zhang, Qihui Zhu, Zhi-Qiang Wu, Jeffrey Ross-Ibarra, Brandon S. Gaut, Song Ge, Tao Sang

Journal:

New Phytologist

Year:

2009

Language:

english

File:

PDF, 851 KB

english, 2009

42

The Genomic Signature of Crop-Wild Introgression in Maize

Hufford, Matthew B., Lubinksy, Pesach, Pyhäjärvi, Tanja, Devengenzo, Michael T., Ellstrand, Norman C., Ross-Ibarra, Jeffrey, Mauricio, Rodney

Journal:

Year:

2013

Language:

english

File:

PDF, 4.12 MB

english, 2013

43

Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize

Anderson, Sarah N., Stitzer, Michelle C., Zhou, Peng, Ross-Ibarra, Jeffrey, Hirsch, Cory D., Springer, Nathan M.

Journal:

G3 Genes|Genome|Genetics

Year:

2019

File:

PDF, 1.65 MB

2019

44

Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication

Ramos-Madrigal, Jazmín, Smith, Bruce D., Moreno-Mayar, J. Víctor, Gopalakrishnan, Shyam, Ross-Ibarra, Jeffrey, Gilbert, M. Thomas P., Wales, Nathan

Journal:

Current Biology

Year:

2016

Language:

english

File:

PDF, 1.60 MB

english, 2016

45

Adaptation in plant genomes: Bigger is different

Mei, Wenbin, Stetter, Markus G., Gates, Daniel J., Stitzer, Michelle C., Ross-Ibarra, Jeffrey

Journal:

American Journal of Botany

Year:

2018

Language:

english

File:

PDF, 233 KB

english, 2018

46

Maize domestication and gene interaction

Stitzer, Michelle C., Ross-Ibarra, Jeffrey

Journal:

New Phytologist

Year:

2018

Language:

english

File:

PDF, 2.40 MB

english, 2018

47

Reproductive biology of Macleania rupestris (Ericaceae), a pollen-limited Neotropical cloud-forest species in Costa Rica

Fuchs, Eric J., Ross-Ibarra, Jeffrey, Barrantes, Gilbert

Journal:

Journal of Tropical Ecology

Year:

2010

Language:

english

File:

PDF, 91 KB

english, 2010

48

High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events

Wolfgruber, Thomas K., Nakashima, Megan M., Schneider, Kevin L., Sharma, Anupma, Xie, Zidian, Albert, Patrice S., Xu, Ronghui, Bilinski, Paul, Dawe, R. Kelly, Ross-Ibarra, Jeffrey, Birchler, James A.,

Journal:

Frontiers in Plant Science

Year:

2016

Language:

english

File:

PDF, 2.85 MB

english, 2016

49

From Many, One: Genetic Control of Prolificacy during Maize Domestication

Wills, David M., Whipple, Clinton J., Takuno, Shohei, Kursel, Lisa E., Shannon, Laura M., Ross-Ibarra, Jeffrey, Doebley, John F., Hoekstra, Hopi E.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.33 MB

english, 2013

50

Genetic signals of origin, spread, and introgression in a large sample of maize landraces

Joost van Heerwaarden, John Doebley, William H. Briggs, Jeffrey C. Glaubitz, Major M. Goodman, Jose de Jesus, Sanchez Gonzalez, Jeffrey Ross-Ibarra and Dolores R. Piperno

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.28 MB

english, 2011

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